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Deren Eaton

Yale Post-doc, botanist, evolutionary biologist

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simRRLs

The script simRRLs.py can be used to simulate RADseq-like sequence data on a fixed species tree topology under a coalescent model. The data are output in raw fastq format. I use this script for testing pyRAD. Data can be generated as if they were prepared under several lab techniques (RAD, ddRAD, pairddRAD, GBS, pairGBS), using different size selection windows, with or without indels, and with different levels of divergence between taxa.

Download/git link here
See example usage at this post